<!DOCTYPE html> <html xmlns="http://www.w3.org/1999/xhtml"> <head> <meta charset="utf-8" /> <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> <meta name="generator" content="pandoc" /> <title>Home</title> <script src="site_libs/jquery-1.11.3/jquery.min.js"></script> <meta name="viewport" content="width=device-width, initial-scale=1" /> <link href="site_libs/bootstrap-3.3.5/css/cosmo.min.css" rel="stylesheet" /> <script src="site_libs/bootstrap-3.3.5/js/bootstrap.min.js"></script> <script src="site_libs/bootstrap-3.3.5/shim/html5shiv.min.js"></script> <script src="site_libs/bootstrap-3.3.5/shim/respond.min.js"></script> <script src="site_libs/navigation-1.1/tabsets.js"></script> <link href="site_libs/highlightjs-9.12.0/textmate.css" rel="stylesheet" /> <script src="site_libs/highlightjs-9.12.0/highlight.js"></script> <link href="site_libs/font-awesome-4.5.0/css/font-awesome.min.css" rel="stylesheet" /> <style type="text/css">code{white-space: pre;}</style> <style type="text/css"> pre:not([class]) { background-color: white; } </style> <script type="text/javascript"> if (window.hljs) { hljs.configure({languages: []}); hljs.initHighlightingOnLoad(); if (document.readyState && document.readyState === "complete") { window.setTimeout(function() { hljs.initHighlighting(); }, 0); } } </script> <style type="text/css"> h1 { font-size: 34px; } h1.title { font-size: 38px; } h2 { font-size: 30px; } h3 { font-size: 24px; } h4 { font-size: 18px; } h5 { font-size: 16px; } h6 { font-size: 12px; } .table th:not([align]) { text-align: left; } </style> </head> <body> <style type = "text/css"> .main-container { max-width: 940px; margin-left: auto; margin-right: auto; } code { color: inherit; background-color: rgba(0, 0, 0, 0.04); } img { max-width:100%; height: auto; } .tabbed-pane { padding-top: 12px; } button.code-folding-btn:focus { outline: none; } </style> <style type="text/css"> /* padding for bootstrap navbar */ body { padding-top: 51px; padding-bottom: 40px; } /* offset scroll position for anchor links (for fixed navbar) */ .section h1 { padding-top: 56px; margin-top: -56px; } .section h2 { padding-top: 56px; margin-top: -56px; } .section h3 { padding-top: 56px; margin-top: -56px; } .section h4 { padding-top: 56px; margin-top: -56px; } .section h5 { padding-top: 56px; margin-top: -56px; } .section h6 { padding-top: 56px; margin-top: -56px; } </style> <script> // manage active state of menu based on current page $(document).ready(function () { // active menu anchor href = window.location.pathname href = href.substr(href.lastIndexOf('/') + 1) if (href === "") href = "index.html"; var menuAnchor = $('a[href="' + href + '"]'); // mark it active menuAnchor.parent().addClass('active'); // if it's got a parent navbar menu mark it active as well menuAnchor.closest('li.dropdown').addClass('active'); }); </script> <div class="container-fluid main-container"> <!-- tabsets --> <script> $(document).ready(function () { window.buildTabsets("TOC"); }); </script> <!-- code folding --> <div class="navbar navbar-default navbar-fixed-top" role="navigation"> <div class="container"> <div class="navbar-header"> <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar"> <span class="icon-bar"></span> <span class="icon-bar"></span> <span class="icon-bar"></span> </button> <a class="navbar-brand" href="index.html">MASHvFLASH</a> </div> <div id="navbar" class="navbar-collapse collapse"> <ul class="nav navbar-nav"> <li> <a href="index.html">Home</a> </li> <li> <a href="about.html">About</a> </li> </ul> <ul class="nav navbar-nav navbar-right"> <li> <a href="https://github.com/willwerscheid/MASHvFLASH"> <span class="fa fa-github"></span> </a> </li> </ul> </div><!--/.nav-collapse --> </div><!--/.container --> </div><!--/.navbar --> <!-- Add a small amount of space between sections. --> <style type="text/css"> div.section { padding-top: 12px; } </style> <div class="fluid-row" id="header"> <h1 class="title toc-ignore">Home</h1> </div> <p><strong>Last updated:</strong> 2018-08-05</p> <strong>workflowr checks:</strong> <small>(Click a bullet for more information)</small> <ul> <li> <p><details> <summary> <strong style="color:blue;">✔</strong> <strong>R Markdown file:</strong> up-to-date </summary></p> <p>Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.</p> </details> </li> <li> <p><details> <summary> <strong style="color:blue;">✔</strong> <strong>Repository version:</strong> <a href="https://github.com/willwerscheid/MASHvFLASH/tree/21a27cb2fbdeec244c3c6e0dfdc6aad655c8bde5" target="_blank">21a27cb</a> </summary></p> Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility. The version displayed above was the version of the Git repository at the time these results were generated. <br><br> Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use <code>wflow_publish</code> or <code>wflow_git_commit</code>). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated: <pre><code> Ignored files: Ignored: .DS_Store Ignored: .Rhistory Ignored: .Rproj.user/ Ignored: data/ Ignored: docs/.DS_Store Ignored: docs/images/.DS_Store Ignored: docs/images/.Rapp.history Ignored: output/.DS_Store Ignored: output/.Rapp.history Ignored: output/MASHvFLASHgtex/.DS_Store Ignored: output/MASHvFLASHsims/.DS_Store Ignored: output/MASHvFLASHsims/backfit/.DS_Store Ignored: output/MASHvFLASHsims/backfit/.Rapp.history </code></pre> Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes. </details> </li> </ul> <details> <summary> <small><strong>Expand here to see past versions:</strong></small> </summary> <ul> <table style="border-collapse:separate; border-spacing:5px;"> <thead> <tr> <th style="text-align:left;"> File </th> <th style="text-align:left;"> Version </th> <th style="text-align:left;"> Author </th> <th style="text-align:left;"> Date </th> <th style="text-align:left;"> Message </th> </tr> </thead> <tbody> <tr> <td style="text-align:left;"> html </td> <td style="text-align:left;"> <a href="https://cdn.rawgit.com/willwerscheid/MASHvFLASH/1d57c0873b1cf4b4e43b78ff76e5a4f681fad8f8/docs/index.html" target="_blank">1d57c08</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-08-04 </td> <td style="text-align:left;"> Build site. </td> </tr> <tr> <td style="text-align:left;"> Rmd </td> <td style="text-align:left;"> <a href="https://github.com/willwerscheid/MASHvFLASH/blob/c018ca36e5c10476f5502b422393a8b6870a559f/analysis/index.Rmd" target="_blank">c018ca3</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-08-04 </td> <td style="text-align:left;"> wflow_publish(c(“analysis/index.Rmd”, “analysis/Top20vZero.Rmd”)) </td> </tr> <tr> <td style="text-align:left;"> html </td> <td style="text-align:left;"> <a href="https://cdn.rawgit.com/willwerscheid/MASHvFLASH/88ac9e198ab8fcbd34486a383c900300d8a126fc/docs/index.html" target="_blank">88ac9e1</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-08-04 </td> <td style="text-align:left;"> Build site. </td> </tr> <tr> <td style="text-align:left;"> Rmd </td> <td style="text-align:left;"> <a href="https://github.com/willwerscheid/MASHvFLASH/blob/85bdd0b04af87cbe3a53d3fb242d8be700bac988/analysis/index.Rmd" target="_blank">85bdd0b</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-08-04 </td> <td style="text-align:left;"> wflow_publish(c(“analysis/OHFvTop20.Rmd”, “analysis/index.Rmd”)) </td> </tr> <tr> <td style="text-align:left;"> html </td> <td style="text-align:left;"> <a href="https://cdn.rawgit.com/willwerscheid/MASHvFLASH/3d2274cd3a61e8525132d646b3dae7d752b995b3/docs/index.html" target="_blank">3d2274c</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-08-04 </td> <td style="text-align:left;"> Build site. </td> </tr> <tr> <td style="text-align:left;"> Rmd </td> <td style="text-align:left;"> <a href="https://github.com/willwerscheid/MASHvFLASH/blob/3cf1ff90cfb92e0b42128018418b82991e43b639/analysis/index.Rmd" target="_blank">3cf1ff9</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-08-04 </td> <td style="text-align:left;"> wflow_publish(c(“analysis/index.Rmd”)) </td> </tr> <tr> <td style="text-align:left;"> html </td> <td style="text-align:left;"> <a href="https://cdn.rawgit.com/willwerscheid/MASHvFLASH/592a42791c375fab8495f9283f938c631a2b2178/docs/index.html" target="_blank">592a427</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-08-03 </td> <td style="text-align:left;"> Build site. </td> </tr> <tr> <td style="text-align:left;"> Rmd </td> <td style="text-align:left;"> <a href="https://github.com/willwerscheid/MASHvFLASH/blob/0d2b9b52619ff9879d3f16e9bc7cb414cc48dafc/analysis/index.Rmd" target="_blank">0d2b9b5</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-08-03 </td> <td style="text-align:left;"> wflow_publish(c(“analysis/index.Rmd”, “analysis/MASHvTop20.Rmd”)) </td> </tr> <tr> <td style="text-align:left;"> html </td> <td style="text-align:left;"> <a href="https://cdn.rawgit.com/willwerscheid/MASHvFLASH/98676689d40c4c3fe5a83ef87c561bb1d181fd45/docs/index.html" target="_blank">9867668</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-08-03 </td> <td style="text-align:left;"> Build site. </td> </tr> <tr> <td style="text-align:left;"> Rmd </td> <td style="text-align:left;"> <a href="https://github.com/willwerscheid/MASHvFLASH/blob/5f31e169d5e4f1b25d9d6d4eda289171ae60f46e/analysis/index.Rmd" target="_blank">5f31e16</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-08-03 </td> <td style="text-align:left;"> wflow_publish(c(“analysis/index.Rmd”, “analysis/MASHvTop20.Rmd”)) </td> </tr> <tr> <td style="text-align:left;"> html </td> <td style="text-align:left;"> <a href="https://cdn.rawgit.com/willwerscheid/MASHvFLASH/e78875ccee6156479deb7b221b05bf43f1e9d442/docs/index.html" target="_blank">e78875c</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-08-02 </td> <td style="text-align:left;"> Build site. </td> </tr> <tr> <td style="text-align:left;"> Rmd </td> <td style="text-align:left;"> <a href="https://github.com/willwerscheid/MASHvFLASH/blob/0e165ca9657c7b0798613ad8914cd2b5cc442da7/analysis/index.Rmd" target="_blank">0e165ca</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-08-02 </td> <td style="text-align:left;"> wflow_publish(c(“analysis/MASHvOHF.Rmd”, “analysis/index.Rmd”)) </td> </tr> <tr> <td style="text-align:left;"> html </td> <td style="text-align:left;"> <a href="https://cdn.rawgit.com/willwerscheid/MASHvFLASH/73c0870d4523d2f7ac530dae598d0ba020719f9a/docs/index.html" target="_blank">73c0870</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-08-02 </td> <td style="text-align:left;"> Build site. </td> </tr> <tr> <td style="text-align:left;"> Rmd </td> <td style="text-align:left;"> <a href="https://github.com/willwerscheid/MASHvFLASH/blob/1f335861d987a2571909ee7c0216a2b04dbe8d9f/analysis/index.Rmd" target="_blank">1f33586</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-08-02 </td> <td style="text-align:left;"> wflow_publish(“analysis/index.Rmd”) </td> </tr> <tr> <td style="text-align:left;"> html </td> <td style="text-align:left;"> <a href="https://cdn.rawgit.com/willwerscheid/MASHvFLASH/726860229931fa4c4455cb8e37f3be5787159919/docs/index.html" target="_blank">7268602</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-08-01 </td> <td style="text-align:left;"> Build site. </td> </tr> <tr> <td style="text-align:left;"> Rmd </td> <td style="text-align:left;"> <a href="https://github.com/willwerscheid/MASHvFLASH/blob/ba83832b29a19d55d79e4353f5807a2d5776c1e5/analysis/index.Rmd" target="_blank">ba83832</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-08-01 </td> <td style="text-align:left;"> wflow_publish(“analysis/index.Rmd”) </td> </tr> <tr> <td style="text-align:left;"> html </td> <td style="text-align:left;"> <a href="https://cdn.rawgit.com/willwerscheid/MASHvFLASH/c6f7e7a18609da46b02f640066cd52cd7c6cb4f9/docs/index.html" target="_blank">c6f7e7a</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-07-31 </td> <td style="text-align:left;"> Build site. </td> </tr> <tr> <td style="text-align:left;"> Rmd </td> <td style="text-align:left;"> <a href="https://github.com/willwerscheid/MASHvFLASH/blob/985674805fcbadf060bd20ced7890728771a339b/analysis/index.Rmd" target="_blank">9856748</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-07-31 </td> <td style="text-align:left;"> wflow_publish(“analysis/index.Rmd”) </td> </tr> <tr> <td style="text-align:left;"> Rmd </td> <td style="text-align:left;"> <a href="https://github.com/willwerscheid/MASHvFLASH/blob/816d03ca63d2efd38197513e71a614b62e40934e/analysis/index.Rmd" target="_blank">816d03c</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-07-30 </td> <td style="text-align:left;"> wflow_publish(“analysis/index.Rmd”) </td> </tr> <tr> <td style="text-align:left;"> Rmd </td> <td style="text-align:left;"> <a href="https://github.com/willwerscheid/MASHvFLASH/blob/a5daba8c042d3d0424c9c36eb9fed53aaef7e442/analysis/index.Rmd" target="_blank">a5daba8</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-07-30 </td> <td style="text-align:left;"> wflow_publish(c(“analysis/MASHvFLASHgtex.Rmd”, </td> </tr> <tr> <td style="text-align:left;"> html </td> <td style="text-align:left;"> <a href="https://cdn.rawgit.com/willwerscheid/MASHvFLASH/0c59b6bb9572c7f5de2ba60fcbcf0a1f1cd2d2df/docs/index.html" target="_blank">0c59b6b</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-07-28 </td> <td style="text-align:left;"> Build site. </td> </tr> <tr> <td style="text-align:left;"> Rmd </td> <td style="text-align:left;"> <a href="https://github.com/willwerscheid/MASHvFLASH/blob/aee26f0de9632661ac56bc09546ff12279e8b0d7/analysis/index.Rmd" target="_blank">aee26f0</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-07-28 </td> <td style="text-align:left;"> wflow_publish(“analysis/index.Rmd”) </td> </tr> <tr> <td style="text-align:left;"> html </td> <td style="text-align:left;"> <a href="https://cdn.rawgit.com/willwerscheid/MASHvFLASH/7e833c11599a973aa2ba20758335deef4311cea5/docs/index.html" target="_blank">7e833c1</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-07-28 </td> <td style="text-align:left;"> Build site. </td> </tr> <tr> <td style="text-align:left;"> Rmd </td> <td style="text-align:left;"> <a href="https://github.com/willwerscheid/MASHvFLASH/blob/a3d67a70d3c5a74bdd2119f4a52742271deac52e/analysis/index.Rmd" target="_blank">a3d67a7</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-07-28 </td> <td style="text-align:left;"> wflow_publish(“analysis/index.Rmd”) </td> </tr> <tr> <td style="text-align:left;"> html </td> <td style="text-align:left;"> <a href="https://cdn.rawgit.com/willwerscheid/MASHvFLASH/76619eaf79fd50cd533381a42e934bd1fa481274/docs/index.html" target="_blank">76619ea</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-07-22 </td> <td style="text-align:left;"> Build site. </td> </tr> <tr> <td style="text-align:left;"> Rmd </td> <td style="text-align:left;"> <a href="https://github.com/willwerscheid/MASHvFLASH/blob/30e7d2365049920928a8a1b14bb035ae97a6430e/analysis/index.Rmd" target="_blank">30e7d23</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-07-22 </td> <td style="text-align:left;"> wflow_publish(c(“analysis/index.Rmd”, </td> </tr> <tr> <td style="text-align:left;"> html </td> <td style="text-align:left;"> <a href="https://cdn.rawgit.com/willwerscheid/MASHvFLASH/fce2b775f72b19231fd0119dcfae4556dc70e13b/docs/index.html" target="_blank">fce2b77</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-07-22 </td> <td style="text-align:left;"> Build site. </td> </tr> <tr> <td style="text-align:left;"> Rmd </td> <td style="text-align:left;"> <a href="https://github.com/willwerscheid/MASHvFLASH/blob/302143dc764a71d71a9e561fba1039f5216e3238/analysis/index.Rmd" target="_blank">302143d</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-07-22 </td> <td style="text-align:left;"> wflow_publish(c(“analysis/index.Rmd”, “analysis/about.Rmd”)) </td> </tr> <tr> <td style="text-align:left;"> html </td> <td style="text-align:left;"> <a href="https://cdn.rawgit.com/willwerscheid/MASHvFLASH/f4ebd13db6ae2a48d19f397e424b74b860cf6f1c/docs/index.html" target="_blank">f4ebd13</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-06-27 </td> <td style="text-align:left;"> Build site. </td> </tr> <tr> <td style="text-align:left;"> Rmd </td> <td style="text-align:left;"> <a href="https://github.com/willwerscheid/MASHvFLASH/blob/2ce499f27cbb6623a570da477eda1908d7bfbd39/analysis/index.Rmd" target="_blank">2ce499f</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-06-27 </td> <td style="text-align:left;"> wflow_publish(c(“analysis/about.Rmd”, “analysis/index.Rmd”)) </td> </tr> <tr> <td style="text-align:left;"> html </td> <td style="text-align:left;"> <a href="https://cdn.rawgit.com/willwerscheid/MASHvFLASH/a9c6a2de55bc115373e1870ffebb2a14d33d14a8/docs/index.html" target="_blank">a9c6a2d</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-06-26 </td> <td style="text-align:left;"> Build site. </td> </tr> <tr> <td style="text-align:left;"> Rmd </td> <td style="text-align:left;"> <a href="https://github.com/willwerscheid/MASHvFLASH/blob/e6b255b2c718d95c8e2809ca7b803c5aaff4866c/analysis/index.Rmd" target="_blank">e6b255b</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-06-26 </td> <td style="text-align:left;"> wflow_publish(“analysis/index.Rmd”) </td> </tr> <tr> <td style="text-align:left;"> html </td> <td style="text-align:left;"> <a href="https://cdn.rawgit.com/willwerscheid/MASHvFLASH/07d1fc7ba7372ea70411f187ee352caaf2b55cbf/docs/index.html" target="_blank">07d1fc7</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-06-24 </td> <td style="text-align:left;"> Build site. </td> </tr> <tr> <td style="text-align:left;"> Rmd </td> <td style="text-align:left;"> <a href="https://github.com/willwerscheid/MASHvFLASH/blob/660d4c5b45243f8e3e73b30bb28f0df9baf5821b/analysis/index.Rmd" target="_blank">660d4c5</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-06-24 </td> <td style="text-align:left;"> wflow_publish(c(“analysis/index.Rmd”)) </td> </tr> <tr> <td style="text-align:left;"> html </td> <td style="text-align:left;"> <a href="https://cdn.rawgit.com/willwerscheid/MASHvFLASH/97fa87ceb554d2998662e546e58eceebcea3ce5d/docs/index.html" target="_blank">97fa87c</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-06-24 </td> <td style="text-align:left;"> Build site. </td> </tr> <tr> <td style="text-align:left;"> Rmd </td> <td style="text-align:left;"> <a href="https://github.com/willwerscheid/MASHvFLASH/blob/42cd89c485cdf6fb255679adcd67c8e2b098018e/analysis/index.Rmd" target="_blank">42cd89c</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-06-24 </td> <td style="text-align:left;"> wflow_publish(c(“analysis/MASHvFLASHsims2.Rmd”, </td> </tr> <tr> <td style="text-align:left;"> html </td> <td style="text-align:left;"> <a href="https://cdn.rawgit.com/willwerscheid/MASHvFLASH/05ddaac20128b3132839dd32ecb6a1423e6de57a/docs/index.html" target="_blank">05ddaac</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-06-18 </td> <td style="text-align:left;"> Build site. </td> </tr> <tr> <td style="text-align:left;"> Rmd </td> <td style="text-align:left;"> <a href="https://github.com/willwerscheid/MASHvFLASH/blob/59c9e8e814c8f4732944d5cbd34371fd12d7b5f3/analysis/index.Rmd" target="_blank">59c9e8e</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-06-18 </td> <td style="text-align:left;"> wflow_publish(“analysis/index.Rmd”) </td> </tr> <tr> <td style="text-align:left;"> html </td> <td style="text-align:left;"> <a href="https://cdn.rawgit.com/willwerscheid/MASHvFLASH/c7561ae8e7521fff23d037ed4e12d934f9b215c8/docs/index.html" target="_blank">c7561ae</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-06-18 </td> <td style="text-align:left;"> Build site. </td> </tr> <tr> <td style="text-align:left;"> Rmd </td> <td style="text-align:left;"> <a href="https://github.com/willwerscheid/MASHvFLASH/blob/6422a1251e6266e2c53dabb69e3a9e7fe37f3c44/analysis/index.Rmd" target="_blank">6422a12</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-06-18 </td> <td style="text-align:left;"> wflow_publish(“analysis/index.Rmd”) </td> </tr> <tr> <td style="text-align:left;"> html </td> <td style="text-align:left;"> <a href="https://cdn.rawgit.com/willwerscheid/MASHvFLASH/55504eca90b0063b772edbb1bbb499f1e43a6123/docs/index.html" target="_blank">55504ec</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-06-16 </td> <td style="text-align:left;"> Build site. </td> </tr> <tr> <td style="text-align:left;"> Rmd </td> <td style="text-align:left;"> <a href="https://github.com/willwerscheid/MASHvFLASH/blob/94b77ff8f9e97ab1443b9f6205abbbed42149fa3/analysis/index.Rmd" target="_blank">94b77ff</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-06-16 </td> <td style="text-align:left;"> wflow_publish(“analysis/index.Rmd”) </td> </tr> <tr> <td style="text-align:left;"> html </td> <td style="text-align:left;"> <a href="https://cdn.rawgit.com/willwerscheid/MASHvFLASH/95f1aca21f8766a98ff1effb972f7eb6afd6414a/docs/index.html" target="_blank">95f1aca</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-06-15 </td> <td style="text-align:left;"> Build site. </td> </tr> <tr> <td style="text-align:left;"> Rmd </td> <td style="text-align:left;"> <a href="https://github.com/willwerscheid/MASHvFLASH/blob/2052215c4e762bcac0a6121da97e186172999cf4/analysis/index.Rmd" target="_blank">2052215</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-06-15 </td> <td style="text-align:left;"> wflow_publish(“analysis/index.Rmd”) </td> </tr> <tr> <td style="text-align:left;"> html </td> <td style="text-align:left;"> <a href="https://cdn.rawgit.com/willwerscheid/MASHvFLASH/958fa1ed22c53a00d3ded9e89e4d74268b37ecbd/docs/index.html" target="_blank">958fa1e</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-06-11 </td> <td style="text-align:left;"> Build site. </td> </tr> <tr> <td style="text-align:left;"> Rmd </td> <td style="text-align:left;"> <a href="https://github.com/willwerscheid/MASHvFLASH/blob/99104f2110336f9cfd2c9b57488813270e868a29/analysis/index.Rmd" target="_blank">99104f2</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-06-11 </td> <td style="text-align:left;"> wflow_publish(“analysis/index.Rmd”) </td> </tr> <tr> <td style="text-align:left;"> html </td> <td style="text-align:left;"> <a href="https://cdn.rawgit.com/willwerscheid/MASHvFLASH/a738d4a38388d2d8606ffd0b54de4aea1566e445/docs/index.html" target="_blank">a738d4a</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-06-09 </td> <td style="text-align:left;"> Build site. </td> </tr> <tr> <td style="text-align:left;"> Rmd </td> <td style="text-align:left;"> <a href="https://github.com/willwerscheid/MASHvFLASH/blob/6e63015e907730acd637cec1c7b622617a7bc7f6/analysis/index.Rmd" target="_blank">6e63015</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-06-09 </td> <td style="text-align:left;"> wflow_publish(“analysis/index.Rmd”) </td> </tr> <tr> <td style="text-align:left;"> html </td> <td style="text-align:left;"> <a href="https://cdn.rawgit.com/willwerscheid/MASHvFLASH/53ca12cfc814dac4103403256f3b2725ae85ff71/docs/index.html" target="_blank">53ca12c</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-06-09 </td> <td style="text-align:left;"> initial setup </td> </tr> <tr> <td style="text-align:left;"> Rmd </td> <td style="text-align:left;"> <a href="https://github.com/willwerscheid/MASHvFLASH/blob/3314e19bf7c33df03ac2fd9ffe73faf33e13d06a/analysis/index.Rmd" target="_blank">3314e19</a> </td> <td style="text-align:left;"> Jason Willwerscheid </td> <td style="text-align:left;"> 2018-06-09 </td> <td style="text-align:left;"> Start workflowr project. </td> </tr> </tbody> </table> </ul> <p></details></p> <hr /> <p><a href="intro.html">An introductory vignette.</a></p> <p><a href="MASHvFLASHsims.html">MASH v FLASH simulation results.</a> Compares MASH and FLASH fits to data simulated from MASH and FLASH models.</p> <p><a href="MASHvFLASHsims2.html">MASH v FLASH detailed simulation study.</a> Compares the performance of MASH and FLASH on different covariance structures in a single simulation setting.</p> <p><a href="MASHvFLASHgtex.html">MASH v FLASH analysis of GTEx data (strong tests).</a> Compares MASH and FLASH fits to “strong” tests from the GTEx dataset.</p> <p><a href="MASHvFLASHrandom.html">MASH v FLASH analysis of GTEx data (random tests).</a> Same, but uses random tests from the GTEx dataset.</p> <p><a href="MASHvFLASHgtex2.html">MASH v FLASH workflows for GTEx.</a> Proposes improved workflows to obtain MASH and FLASH fits to GTEx data. Describes the MASH fit and five different FLASH fits (“OHF”, “Top 5”, “Top 10”, “Top 20”, and “Zero”) in detail.</p> <p>Next up is a series of analyses that examine individual tests in an effort to identify salient differences among fits:</p> <ul> <li><p><a href="MASHvOHF.html">MASH v FLASH GTEx analysis: MASH v OHF.</a></p></li> <li><p><a href="MASHvTop20.html">MASH v FLASH GTEx analysis: MASH v “Top 20”.</a></p></li> <li><p><a href="OHFvTop20.html">MASH v FLASH GTEx analysis: OHF v “Top 20”.</a></p></li> <li><p><a href="Top20vZero.html">MASH v FLASH GTEx analysis: “Top 20” v “Zero”.</a></p></li> </ul> <!-- Adjust MathJax settings so that all math formulae are shown using TeX fonts only; see http://docs.mathjax.org/en/latest/configuration.html. This will make the presentation more consistent at the cost of the webpage sometimes taking slightly longer to load. 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