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Last updated: 2018-07-22

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✔ Repository version: 302143d
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```
Ignored files:
    Ignored:    .DS_Store
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    docs/.DS_Store
    Ignored:    docs/images/.DS_Store
    Ignored:    output/.DS_Store

Unstaged changes:
    Modified:   analysis/MASHvFLASHgtex2.Rmd
    Deleted:    analysis/license.Rmd
    Modified:   code/sims2.R
    Modified:   output/README.md
```
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File	Version	Author	Date	Message
Rmd	302143d	Jason Willwerscheid	2018-07-22	wflow_publish(c(“analysis/index.Rmd”, “analysis/about.Rmd”))
html	f4ebd13	Jason Willwerscheid	2018-06-27	Build site.
Rmd	2ce499f	Jason Willwerscheid	2018-06-27	wflow_publish(c(“analysis/about.Rmd”, “analysis/index.Rmd”))
html	a9c6a2d	Jason Willwerscheid	2018-06-26	Build site.
Rmd	e6b255b	Jason Willwerscheid	2018-06-26	wflow_publish(“analysis/index.Rmd”)
html	07d1fc7	Jason Willwerscheid	2018-06-24	Build site.
Rmd	660d4c5	Jason Willwerscheid	2018-06-24	wflow_publish(c(“analysis/index.Rmd”))
html	97fa87c	Jason Willwerscheid	2018-06-24	Build site.
Rmd	42cd89c	Jason Willwerscheid	2018-06-24	wflow_publish(c(“analysis/MASHvFLASHsims2.Rmd”,
html	05ddaac	Jason Willwerscheid	2018-06-18	Build site.
Rmd	59c9e8e	Jason Willwerscheid	2018-06-18	wflow_publish(“analysis/index.Rmd”)
html	c7561ae	Jason Willwerscheid	2018-06-18	Build site.
Rmd	6422a12	Jason Willwerscheid	2018-06-18	wflow_publish(“analysis/index.Rmd”)
html	55504ec	Jason Willwerscheid	2018-06-16	Build site.
Rmd	94b77ff	Jason Willwerscheid	2018-06-16	wflow_publish(“analysis/index.Rmd”)
html	95f1aca	Jason Willwerscheid	2018-06-15	Build site.
Rmd	2052215	Jason Willwerscheid	2018-06-15	wflow_publish(“analysis/index.Rmd”)
html	958fa1e	Jason Willwerscheid	2018-06-11	Build site.
Rmd	99104f2	Jason Willwerscheid	2018-06-11	wflow_publish(“analysis/index.Rmd”)
html	a738d4a	Jason Willwerscheid	2018-06-09	Build site.
Rmd	6e63015	Jason Willwerscheid	2018-06-09	wflow_publish(“analysis/index.Rmd”)
html	53ca12c	Jason Willwerscheid	2018-06-09	initial setup
Rmd	3314e19	Jason Willwerscheid	2018-06-09	Start workflowr project.

Current:

Introduction. A vignette.

MASH v FLASH simulation results. Compares FLASH fits to MASH fits in a number of settings. Uses various methods to fit the FLASH object. The “OHL” method is best.

MASH v FLASH on GTEx. Compares FLASH to MASH using data from the GTEx project. Results are similar, but FLASH is more conservative.

MASH v FLASH detailed simulation study. Using the “OHL” method, compares the performance of FLASH-pn, FLASH-ash, and MASH in a single simulation setting. FLASH and MASH perform differently on different covariance structures. There is little or no advantage to using ash priors rather than point-normals.

MASH v FLASH detailed GTEx study. Uses an improved workflow to examine differences in MASH and FLASH fits to GTEx data. Particularly strong effects in a single condition might cause MASH to miss smaller effects that are shared among conditions. But FLASH might miss very small effects that are shared across all conditions.

Archived:

A first attempt. Stowed and forgotten.

This reproducible R Markdown analysis was created with workflowr 1.0.1