Last updated: 2018-07-17

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• ✔ R Markdown file: up-to-date

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• ✔ Repository version: e84909d

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  Ignored files:
      Ignored:    .Rhistory
      Ignored:    .Rproj.user/
      Ignored:    R/.Rhistory
      Ignored:    analysis/.Rhistory
      Ignored:    analysis/pipeline/.Rhistory
  
  Untracked files:
      Untracked:  ..gif
      Untracked:  .DS_Store
      Untracked:  R/.DS_Store
      Untracked:  analysis/.DS_Store
      Untracked:  analysis/bibliography.bib
      Untracked:  analysis/detection_rate_correction_cache/
      Untracked:  analysis/pipeline/large_sets.pdf
      Untracked:  analysis/pipeline/temp_ari.txt
      Untracked:  analysis/pipeline/temp_time.txt
      Untracked:  analysis/tutorial_cache/
      Untracked:  analysis/writeup/cite.bib
      Untracked:  analysis/writeup/cite.log
      Untracked:  analysis/writeup/paper.aux
      Untracked:  analysis/writeup/paper.bbl
      Untracked:  analysis/writeup/paper.blg
      Untracked:  analysis/writeup/paper.log
      Untracked:  analysis/writeup/paper.out
      Untracked:  analysis/writeup/paper.synctex.gz
      Untracked:  analysis/writeup/paper.tex
      Untracked:  analysis/writeup/writeup.aux
      Untracked:  analysis/writeup/writeup.bbl
      Untracked:  analysis/writeup/writeup.blg
      Untracked:  analysis/writeup/writeup.dvi
      Untracked:  analysis/writeup/writeup.log
      Untracked:  analysis/writeup/writeup.out
      Untracked:  analysis/writeup/writeup.synctex.gz
      Untracked:  analysis/writeup/writeup.tex
      Untracked:  analysis/writeup/writeup2.aux
      Untracked:  analysis/writeup/writeup2.bbl
      Untracked:  analysis/writeup/writeup2.blg
      Untracked:  analysis/writeup/writeup2.log
      Untracked:  analysis/writeup/writeup2.out
      Untracked:  analysis/writeup/writeup2.pdf
      Untracked:  analysis/writeup/writeup2.synctex.gz
      Untracked:  analysis/writeup/writeup2.tex
      Untracked:  analysis/writeup/writeup3.aux
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      Untracked:  analysis/writeup/writeup3.synctex.gz
      Untracked:  analysis/writeup/writeup3.tex
      Untracked:  data/unnecessary_in_building/
  
  Unstaged changes:
      Modified:   R/LSLSL.R
      Modified:   R/SLSL.R
      Modified:   R/SLSL_ref.R
      Modified:   R/tsne_spectral.R
      Deleted:    SCNoisyClustering_0.1.0.tar.gz
      Deleted:    analysis/correcting_detection_rate/Buettner.Rmd
      Deleted:    analysis/correcting_detection_rate/Buettner.pdf
      Deleted:    analysis/correcting_detection_rate/Pollen.R
      Deleted:    analysis/correcting_detection_rate/Pollen.Rmd
      Deleted:    analysis/correcting_detection_rate/Pollen.pdf
      Deleted:    analysis/correcting_detection_rate/Usoskin.Rmd
      Deleted:    analysis/correcting_detection_rate/Usoskin.pdf
      Deleted:    analysis/correcting_detection_rate/Usoskin_files/figure-latex/loess residuals-1.pdf
      Deleted:    analysis/correcting_detection_rate/Usoskin_files/figure-latex/pca_plot-1.pdf
      Deleted:    analysis/correcting_detection_rate/Usoskin_files/figure-latex/quantile_plot-1.pdf
      Deleted:    analysis/correcting_detection_rate/Usoskin_files/figure-latex/quantile_plot_log-1.pdf
      Deleted:    analysis/correcting_detection_rate/Usoskin_files/figure-latex/rg residuals-1.pdf
      Deleted:    analysis/correcting_detection_rate/Zeisel.R
      Deleted:    analysis/correcting_detection_rate/detectionrate_alldata.R
      Deleted:    analysis/correcting_detection_rate/detectionrate_pbmc.R
      Deleted:    analysis/correcting_detection_rate/sc.xls
      Modified:   analysis/pipeline/large_sets.Rmd
      Modified:   analysis/pipeline/pbmc_pipeline.R
      Modified:   analysis/pipeline/small_good_sets.Rmd
      Modified:   analysis/pipeline/small_good_sets_result.txt
      Modified:   analysis/pipeline/small_good_sets_time.txt
      Modified:   analysis/writeup/.DS_Store
      Modified:   src/SCNoisyClustering.cpp
      Modified:   src/SCNoisyClustering.o
      Modified:   src/SCNoisyClustering.so
  
  

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File	Version	Author	Date	Message
html	410c051	tk382	2018-07-17	Build site.
Rmd	f6c5b07	tk382	2018-07-11	add website
html	f6c5b07	tk382	2018-07-11	add website

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This reproducible R Markdown analysis was created with workflowr 1.1.1

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