Last updated: 2018-09-28

workflowr checks: (Click a bullet for more information)

✖ R Markdown file: uncommitted changes
The R Markdown file has unstaged changes. To know which version of the R Markdown file created these results, you’ll want to first commit it to the Git repo. If you’re still working on the analysis, you can ignore this warning. When you’re finished, you can run wflow_publish to commit the R Markdown file and build the HTML.
✔ Environment: empty

Great job! The global environment was empty. Objects defined in the global environment can affect the analysis in your R Markdown file in unknown ways. For reproduciblity it’s best to always run the code in an empty environment.
✔ Seed: set.seed(20180924)

The command set.seed(20180924) was run prior to running the code in the R Markdown file. Setting a seed ensures that any results that rely on randomness, e.g. subsampling or permutations, are reproducible.
✔ Session information: recorded

Great job! Recording the operating system, R version, and package versions is critical for reproducibility.
✔ Repository version: 5d39156
Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility. The version displayed above was the version of the Git repository at the time these results were generated.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:
```
Ignored files:
    Ignored:    .Rproj.user/9BE7717F/console06/
    Ignored:    .Rproj.user/9BE7717F/ctx/
    Ignored:    .Rproj.user/9BE7717F/explorer-cache/
    Ignored:    .Rproj.user/9BE7717F/pcs/
    Ignored:    .Rproj.user/9BE7717F/presentation/
    Ignored:    .Rproj.user/9BE7717F/profiles-cache/
    Ignored:    .Rproj.user/9BE7717F/sources/per/
    Ignored:    .Rproj.user/9BE7717F/sources/s-6C0A0637/
    Ignored:    .Rproj.user/9BE7717F/viewer-cache/
    Ignored:    .Rproj.user/shared/notebooks/4377CA6B-about/
    Ignored:    .Rproj.user/shared/notebooks/5F7EF42D-index/
    Ignored:    .Rproj.user/shared/notebooks/ABEFF919-analysis/

Unstaged changes:
    Modified:   analysis/analysis.Rmd
    Modified:   code/delta_log_bars.R
```
Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

Expand here to see past versions:

File	Version	Author	Date	Message
Rmd	5d39156	S. Hutchins	2018-09-28	Added code and analysis for bar charts.
html	5d39156	S. Hutchins	2018-09-28	Added code and analysis for bar charts.
html	fbd5b51	S. Hutchins	2018-09-25	Build site.
html	d4b0350	S. Hutchins	2018-09-25	Build site.
Rmd	876098d	S. Hutchins	2018-09-25	Updated knitr chunks
html	1921828	S. Hutchins	2018-09-25	Build site.
Rmd	e4fd4f5	S. Hutchins	2018-09-25	Added bar charts

Generating Bar Plots for Δ logKa

Maccaca Mulatta + Ligands

Expand here to see past versions of unnamed-chunk-1-1.png:

Version	Author	Date
5d39156	S. Hutchins	2018-09-28
1921828	S. Hutchins	2018-09-25

Session information

sessionInfo()

R version 3.5.1 (2018-07-02)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 7 x64 (build 7601) Service Pack 1

Matrix products: default

locale:
[1] LC_COLLATE=English_United States.1252 
[2] LC_CTYPE=English_United States.1252   
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C                          
[5] LC_TIME=English_United States.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] bindrcpp_0.2.2  ggthemes_4.0.1  ggpubr_0.1.8    magrittr_1.5   
 [5] forcats_0.3.0   stringr_1.3.1   dplyr_0.7.6     purrr_0.2.5    
 [9] readr_1.1.1     tidyr_0.8.1     tibble_1.4.2    ggplot2_3.0.0  
[13] tidyverse_1.2.1

loaded via a namespace (and not attached):
 [1] tidyselect_0.2.4  haven_1.1.2       lattice_0.20-35  
 [4] colorspace_1.3-2  htmltools_0.3.6   yaml_2.2.0       
 [7] rlang_0.2.2       R.oo_1.22.0       pillar_1.3.0     
[10] glue_1.3.0        withr_2.1.2       R.utils_2.7.0    
[13] modelr_0.1.2      readxl_1.1.0      bindr_0.1.1      
[16] plyr_1.8.4        munsell_0.5.0     gtable_0.2.0     
[19] workflowr_1.1.1   cellranger_1.1.0  rvest_0.3.2      
[22] R.methodsS3_1.7.1 evaluate_0.11     labeling_0.3     
[25] knitr_1.20        broom_0.5.0       Rcpp_0.12.18     
[28] scales_1.0.0      backports_1.1.2   jsonlite_1.5     
[31] hms_0.4.2         digest_0.6.17     stringi_1.2.4    
[34] grid_3.5.1        rprojroot_1.3-2   cli_1.0.1        
[37] tools_3.5.1       lazyeval_0.2.1    crayon_1.3.4     
[40] whisker_0.3-2     pkgconfig_2.0.2   xml2_1.2.0       
[43] lubridate_1.7.4   assertthat_0.2.0  rmarkdown_1.10   
[46] httr_1.3.1        rstudioapi_0.7    R6_2.2.2         
[49] nlme_3.1-137      git2r_0.23.0      compiler_3.5.1

This reproducible R Markdown analysis was created with workflowr 1.1.1

Analysis

Generating Bar Plots for Δ logKa

Maccaca Mulatta + Ligands

Session information