Last updated: 2019-06-25
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File | Version | Author | Date | Message |
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Rmd | b78e77f | Jean Morrison | 2019-06-25 | wflow_publish(files = c(“analysis/simulations.Rmd”)) |
html | 286f4e9 | Jean Morrison | 2019-06-25 | Build site. |
Rmd | 8f3b82e | Jean Morrison | 2019-06-25 | wflow_publish(files = c(“analysis/about.Rmd”, “analysis/index.Rmd”, “analysis/ldl_cad.Rmd”, “analysis/license.Rmd”, |
Simulations are run using the causeSims
R package. The package can be downloaded using
devtools::install_github("jean997/causeSims")
This package relies on multiple R packages that are not on CRAN, so you will need to download these separately. For detailed installation instructions including installation of supporting R packages for other methods and a detailed description of the package see here. There you can also find a detailed walk through of a single simulation and explanations of the functions contained in the package.
We conduct simulations using the Dynamical Statisical Comparisons software. DSC files for executing the experiments presented in the paper can be found here: power, false positives
To execute them, use the following commands (on a compute cluster)
nohup dsc --replicate 100 --host config.yml -c 4 pwr.dsc > pwr_dsc.out &
nohup dsc --replicate 100 --host config.yml -c 4 false_positives.dsc > fp_dsc.out &
You will need to modify the config.yml
file to be specific to your compute cluster.
This reproducible R Markdown analysis was created with workflowr 1.1.1