Last updated: 2018-12-14

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• ✔ Repository version: 1fc3e91

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      Ignored:    data/fastqs/
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      Ignored:    data/hs_cdna.fa.gz
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File	Version	Author	Date	Message
Rmd	55164fb	Lambda Moses	2018-12-14	Start workflowr project.

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This repository has example notebooks that demonstrate how to go from fastq files to sparse matrices for scRNA-seq data from start to end. To run the notebooks, please install kallisto, bustools, and the BUStoolsR R package.

1. 10x v2 chemistry - 1k 1:1 Mixture of Fresh Frozen Human (HEK293T) and Mouse (NIH3T3) Cells
2. 10x v3 chemistry - 1k 1:1 Mixture of Fresh Frozen Human (HEK293T) and Mouse (NIH3T3) Cells (coming soon)

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This reproducible R Markdown analysis was created with workflowr 1.1.1

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