Plots for O-Bayes 17

Correlated null

FDR & Power

No id variables; using all as measure variables

Warning: Computation failed in `stat_summary()`:
object 'mean_sdp' of mode 'function' was not found

No id variables; using all as measure variables

Warning: Computation failed in `stat_summary()`:
object 'mean_sdp' of mode 'function' was not found

No id variables; using all as measure variables

Warning: Computation failed in `stat_summary()`:
object 'mean_sdp' of mode 'function' was not found

No id variables; using all as measure variables

Warning: Computation failed in `stat_summary()`:
object 'mean_sdp' of mode 'function' was not found

Deconvolution

Corr vs Indep

The following plots show that although the performance of CASH is not ideal for the more sparse case (\(\pi_0 = 0.9\)), it gives results under correlation similar to what other methods give under independence.

Warning: Computation failed in `stat_summary()`:
object 'mean_sdp' of mode 'function' was not found

Warning: Computation failed in `stat_summary()`:
object 'mean_sdp' of mode 'function' was not found

Warning: Computation failed in `stat_summary()`:
object 'mean_sdp' of mode 'function' was not found

Peculiarities of correlation

Session information

sessionInfo()

R version 3.4.2 (2017-09-28)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS High Sierra 10.13.2

Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] ggplot2_2.2.1     reshape2_1.4.2    edgeR_3.20.1     
 [4] limma_3.34.0      ashr_2.1-27       Rmosek_7.1.3     
 [7] PolynomF_0.94     cvxr_0.0.0.9009   REBayes_0.85     
[10] Matrix_1.2-11     SQUAREM_2017.10-1 EQL_1.0-0        
[13] ttutils_1.0-1    

loaded via a namespace (and not attached):
 [1] Rcpp_0.12.13      compiler_3.4.2    git2r_0.19.0     
 [4] plyr_1.8.4        iterators_1.0.8   tools_3.4.2      
 [7] digest_0.6.12     tibble_1.3.4      evaluate_0.10.1  
[10] gtable_0.2.0      lattice_0.20-35   rlang_0.1.4      
[13] foreach_1.4.3     yaml_2.1.14       parallel_3.4.2   
[16] stringr_1.2.0     knitr_1.17        locfit_1.5-9.1   
[19] rprojroot_1.2     grid_3.4.2        rmarkdown_1.6    
[22] magrittr_1.5      scales_0.5.0      backports_1.1.1  
[25] codetools_0.2-15  htmltools_0.3.6   MASS_7.3-47      
[28] colorspace_1.3-2  labeling_0.3      stringi_1.1.5    
[31] lazyeval_0.2.1    munsell_0.4.3     doParallel_1.0.11
[34] pscl_1.5.2        truncnorm_1.0-7