Plots for O-Bayes 17

Correlated null

FDR & Power

No id variables; using all as measure variables

No id variables; using all as measure variables

No id variables; using all as measure variables

No id variables; using all as measure variables

Deconvolution

Corr vs Indep

The following plots show that although the performance of CASH is not ideal for the more sparse case (\(\pi_0 = 0.9\)), it gives results under correlation similar to what other methods give under independence.

Peculiarities of correlation

Session information

sessionInfo()

R version 3.4.3 (2017-11-30)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS High Sierra 10.13.4

Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] ggplot2_2.2.1     reshape2_1.4.3    edgeR_3.20.2     
 [4] limma_3.34.4      ashr_2.2-2        Rmosek_8.0.69    
 [7] PolynomF_1.0-1    CVXR_0.94-4       REBayes_1.2      
[10] Matrix_1.2-12     SQUAREM_2017.10-1 EQL_1.0-0        
[13] ttutils_1.0-1    

loaded via a namespace (and not attached):
 [1] gmp_0.5-13.1      Rcpp_0.12.16      pillar_1.0.1     
 [4] plyr_1.8.4        compiler_3.4.3    git2r_0.21.0     
 [7] R.methodsS3_1.7.1 R.utils_2.6.0     iterators_1.0.9  
[10] tools_3.4.3       digest_0.6.15     bit_1.1-12       
[13] tibble_1.4.1      gtable_0.2.0      evaluate_0.10.1  
[16] lattice_0.20-35   rlang_0.1.6       foreach_1.4.4    
[19] yaml_2.1.18       parallel_3.4.3    Rmpfr_0.6-1      
[22] ECOSolveR_0.3-2   stringr_1.3.0     knitr_1.20       
[25] locfit_1.5-9.1    rprojroot_1.3-2   bit64_0.9-7      
[28] grid_3.4.3        R6_2.2.2          rmarkdown_1.9    
[31] magrittr_1.5      scales_0.5.0      MASS_7.3-47      
[34] backports_1.1.2   codetools_0.2-15  htmltools_0.3.6  
[37] scs_1.1-1         colorspace_1.3-2  labeling_0.3     
[40] stringi_1.1.6     lazyeval_0.2.1    munsell_0.4.3    
[43] doParallel_1.0.11 pscl_1.5.2        truncnorm_1.0-7  
[46] R.oo_1.21.0