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margin: auto;" /></p> <p><img src="figure/cash_fdr_2.rmd/cor%20FDR%20plotting-1.png" width="672" style="display: block; margin: auto;" /></p> <pre><code>No id variables; using all as measure variables</code></pre> <pre><code>Warning: Computation failed in `stat_summary()`: object 'mean_sdp' of mode 'function' was not found</code></pre> <p><img src="figure/cash_fdr_2.rmd/cor%20FDR%20violin-1.png" width="672" style="display: block; margin: auto;" /></p> <pre><code>Warning: Computation failed in `stat_summary()`: object 'mean_sdp' of mode 'function' was not found Warning: Computation failed in `stat_summary()`: object 'mean_sdp' of mode 'function' was not found Warning: Computation failed in `stat_summary()`: object 'mean_sdp' of mode 'function' was not found</code></pre> <p><img src="figure/cash_fdr_2.rmd/cor%20FDR%20variability-1.png" width="960" style="display: block; margin: auto;" /></p> <p><img src="figure/cash_fdr_2.rmd/cor%20FDR%20tail-1.png" width="960" style="display: block; margin: auto;" /><img src="figure/cash_fdr_2.rmd/cor%20FDR%20tail-2.png" width="960" style="display: block; margin: auto;" /></p> </section> <section id="independent-noise" class="level2"> <h2>Independent noise</h2> <pre><code>Warning: Computation failed in `stat_summary()`: Hmisc package required for this function</code></pre> <p><img src="figure/cash_fdr_2.rmd/indep%20pihat0-1.png" width="672" style="display: block; margin: auto;" /></p> <p><img src="figure/cash_fdr_2.rmd/indep%20FDR%20plotting-1.png" width="672" style="display: block; margin: auto;" /></p> </section> <section id="correlated-noise-synthetic-data" class="level2"> <h2>Correlated noise, synthetic data</h2> <pre><code>Warning: Computation failed in `stat_summary()`: Hmisc package required for this function</code></pre> <p><img src="figure/cash_fdr_2.rmd/syn%20pihat0-1.png" width="672" style="display: block; margin: auto;" /></p> <p><img src="figure/cash_fdr_2.rmd/syn%20FDR%20plotting-1.png" width="672" style="display: block; margin: auto;" /></p> </section> <section id="session-information" class="level2"> <h2>Session information</h2> <!-- Insert the session information into the document --> <pre class="r"><code>sessionInfo()</code></pre> <pre><code>R version 3.4.3 (2017-11-30) Platform: x86_64-apple-darwin15.6.0 (64-bit) Running under: macOS High Sierra 10.13.2 Matrix products: default BLAS: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRblas.0.dylib LAPACK: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRlapack.dylib locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] edgeR_3.20.2 limma_3.34.4 ggplot2_2.2.1 [4] reshape2_1.4.3 ashr_2.2-2 Rmosek_8.0.69 [7] PolynomF_1.0-1 CVXR_0.94-4 REBayes_1.2 [10] Matrix_1.2-12 SQUAREM_2017.10-1 EQL_1.0-0 [13] ttutils_1.0-1 loaded via a namespace (and not attached): [1] gmp_0.5-13.1 Rcpp_0.12.14 plyr_1.8.4 [4] compiler_3.4.3 git2r_0.20.0 R.methodsS3_1.7.1 [7] R.utils_2.6.0 iterators_1.0.9 tools_3.4.3 [10] digest_0.6.13 bit_1.1-12 tibble_1.3.4 [13] gtable_0.2.0 evaluate_0.10.1 lattice_0.20-35 [16] rlang_0.1.4 foreach_1.4.4 yaml_2.1.16 [19] parallel_3.4.3 Rmpfr_0.6-1 ECOSolveR_0.3-2 [22] stringr_1.2.0 knitr_1.17 locfit_1.5-9.1 [25] rprojroot_1.3-1 bit64_0.9-7 grid_3.4.3 [28] R6_2.2.2 rmarkdown_1.8 magrittr_1.5 [31] scales_0.5.0 MASS_7.3-47 backports_1.1.2 [34] codetools_0.2-15 htmltools_0.3.6 scs_1.1-1 [37] colorspace_1.3-2 labeling_0.3 stringi_1.1.6 [40] lazyeval_0.2.1 munsell_0.4.3 doParallel_1.0.11 [43] pscl_1.5.2 truncnorm_1.0-7 R.oo_1.21.0 </code></pre> </section> <hr> <p> This <a href="http://rmarkdown.rstudio.com">R Markdown</a> site was created with <a href="https://github.com/jdblischak/workflowr">workflowr</a> </p> <hr> <!-- To enable disqus, uncomment the section below and provide your disqus_shortname --> <!-- disqus <div id="disqus_thread"></div> <script type="text/javascript"> /* * * CONFIGURATION VARIABLES: EDIT BEFORE PASTING INTO YOUR WEBPAGE * * */ var disqus_shortname = 'rmarkdown'; 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