Last updated: 2019-01-15
workflowr checks: (Click a bullet for more information) ✔ R Markdown file: up-to-date 
Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.
 ✔ Environment: empty 
Great job! The global environment was empty. Objects defined in the global environment can affect the analysis in your R Markdown file in unknown ways. For reproduciblity it’s best to always run the code in an empty environment.
 ✔ Seed: 
set.seed(20180501) 
The command set.seed(20180501) was run prior to running the code in the R Markdown file. Setting a seed ensures that any results that rely on randomness, e.g. subsampling or permutations, are reproducible.
 ✔ Session information: recorded 
Great job! Recording the operating system, R version, and package versions is critical for reproducibility.
 ✔ Repository version: 15730f5 
wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:
Ignored files:
    Ignored:    .DS_Store
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    data/.DS_Store
Untracked files:
    Untracked:  analysis/chipexoeg.Rmd
    Untracked:  analysis/efsd.Rmd
    Untracked:  analysis/talk1011.Rmd
    Untracked:  data/chipexo_examples/
    Untracked:  data/chipseq_examples/
    Untracked:  talk.Rmd
    Untracked:  talk.pdf
Unstaged changes:
    Modified:   analysis/binomial.Rmd
    Modified:   analysis/fda.Rmd
    Modified:   analysis/index.Rmd
    Modified:   analysis/sigma.Rmd
Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes. 
| File | Version | Author | Date | Message | 
|---|---|---|---|---|
| Rmd | 15730f5 | Dongyue Xie | 2019-01-15 | wflow_publish(“analysis/r2.Rmd”) | 
sessionInfo()
R version 3.5.1 (2018-07-02)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS High Sierra 10.13.6
Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     
loaded via a namespace (and not attached):
 [1] workflowr_1.1.1   Rcpp_0.12.18      digest_0.6.17    
 [4] rprojroot_1.3-2   R.methodsS3_1.7.1 backports_1.1.2  
 [7] git2r_0.23.0      magrittr_1.5      evaluate_0.11    
[10] stringi_1.2.4     whisker_0.3-2     R.oo_1.22.0      
[13] R.utils_2.7.0     rmarkdown_1.10    tools_3.5.1      
[16] stringr_1.3.1     yaml_2.2.0        compiler_3.5.1   
[19] htmltools_0.3.6   knitr_1.20       
This reproducible R Markdown analysis was created with workflowr 1.1.1